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Amphibian declines and extinctions have been documented around the world, often in protected natural areas. Concern for this alarming trend has focused attention on the need to document all species of amphibians that occur within U.S. National Parks and to search for any signs that amphibians may be declining. This study, an inventory of amphibian species in Virgin Islands National Park, was conducted from 2001 to 2003. The goals of the project were to create a georeferenced inventory of amphibian species, use new analytical techniques to estimate proportion of sites occupied by each species, look for any signs of amphibian decline (missing species, disease, die-offs, etc.), and to establish a protocol that could be used for future monitoring efforts.

Several sampling methods were used to accomplish these goals. Visual encounter surveys and anuran vocalization surveys were conducted in all habitats throughout the park to estimate the proportion of sites or proportion of area occupied (PAO) by amphibian species in each habitat. Line transect methods were used to estimate density of some amphibian species and double observer analysis was used to refine counts based on detection probabilities. Opportunistic collections were used to augment the visual encounter methods for rare species. Data were collected during four sampling periods and every major trail system throughout the park was surveyed.

All of the amphibian species believed to occur on St. John were detected during these surveys. One species not previously reported, the Cuban treefrog (Osteopilus septentrionalis), was also added to the species list. That species and two others (Eleutherodactylus coqui and Eleutherodactylus lentus) bring the total number of introduced amphibians on St. John to three. We detected most of the reptile species thought to occur on St. John, but our methods were less suitable for reptiles compared to amphibians.

No amphibian species appear to be in decline at this time. We found no evidence of disease or of malformations. Our surveys provide a snapshot picture of the status of the amphibian species, so continued monitoring would be necessary to determine long-term trends, but several potential threats to amphibians were identified. Invasive species, especially the Cuban treefrog, have the potential to decrease populations of native amphibians. Introduced mammalian predators are also a potential threat, especially to the reptiles of St. John, and mammalian grazers might have indirect effects on amphibians and reptiles through habitat modification. Finally, loss of habitat to development outside the park boundary could harm some important populations of amphibians and reptiles on the island.

Amphibian declines and extinctions have been documented around the world, often in protected natural areas. Concern for this alarming trend has prompted the U.S. Geological Survey and the National Park Service to document all species of amphibians that occur within U.S. National Parks and to search for any signs that amphibians may be declining. This study, an inventory of amphibian species in Biscayne National Park, was conducted during 2002 and 2003. The goals of the project were to create a georeferenced inventory of amphibian species, use new analytical techniques to estimate proportion of sites occupied by each species, look for evidence of known stressors or problems that may lead to amphibian population decline (invasive species, disease, die-offs, and so forth), and to establish a baseline and methodology that could be used for future monitoring efforts.

Four sampling methods were used to accomplish these goals. Visual encounter surveys and anuran vocalization surveys were conducted at a total of 236 visits to 37 sites in all habitats throughout Biscayne National Park to estimate the proportion of sites or proportion of area occupied (PAO) by each amphibian species in each habitat. More than 100 individuals of 7 amphibian species were detected during standard sampling, and 24 individuals of 6 species of amphibians and 37 individuals of 12 species of reptiles were encountered during opportunistic collections and nighttime road surveys used to augment the visual encounter methods for more rare or cryptic species opportunistically. The software PRESENCE was used to provide PAO estimates for each of the anuran species based on the visual encounter surveys and anuran vocalization data.

Amphibian species (six native and three non-native) were documented in Biscayne National Park during this project. The proportion of area occupied estimates obtained for the six most common amphibians will serve as a comparative baseline for future monitoring efforts. There were fourteen non-marine reptile species detected during this study. The proportion of area occupied for reptile species was not estimated because there were too few encounters during this study. The methods used in this study are adequate to produce reliable estimates of the proportion of sites occupied by most anuran species. Therefore, future sampling at regular intervals could be a cost-effective way of following amphibian occupancy trends.

This study identified some threats to amphibians in Biscayne National Park, especially introduced species including the Cuban treefrog (Osteopilus septentrionalis), the marine or cane toad (Bufo marinus), and the greenhouse frog (Eleutherodactylus planirostris planirostris) that were collectively detected nearly three times as often as native species.

Data on the chemical composition of water and on amphibian populations were collected at least annually from vernal pool and stream sites in Maryland, Washington, D.C., and Virginia from 2001 through 2004.

Data on the chemical composition of water were collected at least once from 47 amphibian research sites in Maryland, Washington, D.C., and Virginia, from 2005 through 2007.

Chytridiomycosis is an amphibian disease linked with population declines worldwide, yet there is little information about its effects on the demography of infected populations. We used capture-recapture data from two infected populations and one uninfected population of boreal toads (Bufo boreas) in the Rocky Mountains, U.S.A. to examine a priori hypotheses about the effect of the amphibian chytrid fungus (Batrachochytrium dendrobatidis, Bd) on survival probability (Φ) and population growth rate (). Bd-positive toads had lower average annual Φ than Bd-negative individuals at sites where Bd was detected suggesting that chytridiomycosis may reduce survival by 31-42% in wild boreal toads. Bd-negative toads at infected sites had comparable survival probabilities as Bd-negative toads at the uninfected site, further supporting observed differences. Model results indicated weak evidence that environmental covariates (particularly cold temperatures during the breeding season) influenced toad survival. The diseased populations were declining by 5 - 7% per year over the 6 years of this study whereas the Bd-free population had comparatively stable ( ≈ 1) population growth. Our data suggest that Bd is a low-level chronic mortality factor in these toad populations rather than an acute factor causing rapid population declines. These results show how some amphibian populations may be coexisting with the amphibian chytrid fungus and highlight the importance of quantitative assessments of survival in wildlife populations challenged with disease.

Aim
The introduction of non-native species into aquatic environments has been linked with local extinctions and altered distributions of native species. We investigated the effect of non-native salmonids on the occupancy of two native amphibians, the long-toed salamander (Ambystoma macrodactylum) and Columbia spotted frog (Rana luteiventris), across three spatial scales: water bodies, small catchments and large catchments.

Location
Mountain lakes at >1500 m elevation were surveyed across the northern Rocky Mountains, USA.

Methods
We surveyed 2267 water bodies for amphibian occupancy (based on evidence of reproduction) and fish presence between 1986 and 2002 and modelled the probability of amphibian occupancy at each spatial scale in relation to habitat availability and quality and fish presence.

Results
After accounting for habitat features, we estimated that A. macrodactylum was 2.3 times more likely to breed in fishless water bodies than in water bodies with fish. Ambystoma macrodactylum also was more likely to occupy small catchments where none of the water bodies contained fish than in catchments where at least one water body contained fish. However, the probability of salamander occupancy in small catchments was also influenced by habitat availability (i.e. the number of water bodies within a catchment) and suitability of remaining fishless water bodies. We found no relationship between fish presence and salamander occupancy at the large-catchment scale, probably because of increased habitat availability. In contrast to A. macrodactylum, we found no relationship between fish presence and R. luteiventris occupancy at any scale.

Main conclusions
Our results suggest that the negative effects of non-native salmonids can extend beyond the boundaries of individual water bodies and increase A. macrodactylum extinction risk at landscape scales. We suspect that niche overlap between non-native fish and A. macrodactylum at higher elevations in the northern Rocky Mountains may lead to extinction in catchments with limited suitable habitat.

Information on amphibian responses to fire and fuel reduction practices is critically needed due to potential declines of species and the prevalence of new, more intensive fire management practices in North American forests. The goals of this review are to summarize the known and potential effects of fire and fuels management on amphibians and their aquatic habitats, and to identify information gaps to help direct future scientific research. Amphibians as a group are taxonomically and ecologically diverse; in turn, responses to fire and associated habitat alteration are expected to vary widely among species and among geographic regions. Available data suggest that amphibian responses to fire are spatially and temporally variable and incompletely understood. Much of the limited research has addressed short-term (1–3 years) effects of prescribed fire on terrestrial life stages of amphibians in the southeastern United States. Information on the long-term negative effects of fire on amphibians and the importance of fire for maintaining amphibian communities is sparse for the majority of taxa in North America. Given the size and severity of recent wildland fires and the national effort to reduce fuels on federal lands, future studies are needed to examine the effects of these landscape disturbances on amphibians. We encourage studies to address population-level responses of amphibians to fire by examining how different life stages are affected by changes in aquatic, riparian, and upland habitats. Research designs need to be credible and provide information that is relevant for fire managers and those responsible for assessing the potential effects of various fuel reduction alternatives on rare, sensitive, and endangered amphibian species.

We assessed the diversity and phylogeny of Saprolegniaceae on amphibian eggs from the Pacific Northwest, with particular focus on Saprolegnia ferax, a species implicated in high egg mortality. We identified isolates from eggs of six amphibians with the internal transcribed spacer (ITS) and 5.8S gene regions and BLAST of the GenBank database. We identified 68 sequences as Saprolegniaceae and 43 sequences as true fungi from at least nine genera. Our phylogenetic analysis of the Saprolegniaceae included isolates within the genera Saprolegnia, Achlya and Leptolegnia. Our phylogeny grouped S. semihypogyna with Achlya rather than with the Saprolegnia reference sequences. We found only one isolate that grouped closely with S. ferax, and this came from a hatchery-raised salmon (Idaho) that we sampled opportunistically. We had representatives of 7–12 species and three genera of Saprolegniaceae on our amphibian eggs. Further work on the ecological roles of different species of Saprolegniaceae is needed to clarify their potential importance in amphibian egg mortality and potential links to population declines.

A GIS facilitates the organization and visualization of data, and can give biologists a better understanding of their landscapes, as well as identify data gaps. The objective of this paper was to introduce how to use a GIS to design and undertake amphibian surveys. Using Yellowstone National Park as an example, we used GIS to select sampling areas using randomized techniques, and to select watersheds within these areas. Within these watersheds, we then used GIS to visualize potential amphibian pond breeding habitats for field sampling. Results from this sampling effort were then organized as a GIS layer depicting the distribution and abundance of amphibian breeding populations. The GIS layer created from these data has become the baseline for comparisons with future surveys.

Chytridiomycosis (infection by the fungus Batrachochytrium dendrobatidis) has been associated with amphibian declines in at least four continents. We report results of disease screens from 210 pond-breeding amphibians from 37 field sites in Oregon and Washington. We detected B. dendrobatidis on 28% of sampled amphibians, and we found >=1 detection of B. dendrobatidis from 43% of sites. Four of seven species tested positive for B. dendrobatidis, including the Northern Red-Legged Frog (Rana aurora), Columbia Spotted Frog (Rana luteiventris), and Oregon Spotted Frog (Rana pretiosa). We also detected B. dendrobatidis in nonnative American Bullfrogs (Rana catesbeiana) from six sites in western and central Oregon. Our study and other recently published findings suggest that B. dendrobatidis has few geographic and host taxa limitations among North American anurans. Further research on virulence, transmissibility, persistence, and interactions with other stressors is needed to assess the potential impact of R. dendrobatidis on Pacific Northwestern amphibians.

The pathogen Batrachochytrium dendrobatidis (Bd) has been associated with amphibian declines in multiple continents, including western North America. We investigated Bd prevalence in Oregon spotted frog (Rana pretiosa), a species that has declined across its range in the Pacific Northwest. Polymerase Chain Reaction analysis of skin swabs indicated that Bd was prevalent within populations (420 of 617 juvenile and adults) and widespread among populations (36 of 36 sites) where we sampled R. pretiosa in Oregon and Washington. We rarely detected Bd in R. pretiosa larvae (2 of 72). Prevalence of Bd in post-metamorphic R. pretiosa was inversely related to frog size. We found support for an interactive effect of elevation and sampling date on Bd: prevalence of Bd generally increased with date but this effect was more pronounced at lower elevations. We also found evidence that the body condition of juvenile R. pretiosa with Bd decreased after their first winter. Our data indicate that some Oregon spotted frog populations are currently persisting with relatively high Bd prevalence, but the risk posed by Bd is unknown.

Several western ranid frogs possess a unique strategy of breeding communally over a short temporal window and reusing oviposition sites between years. However, little is published on the characteristics of oviposition sites selected by these explosive breeders. The Columbia spotted frog (Rana luteiventris) is native to northwestern North America and is of conservation concern in the southern portions of its range. As part of a study examining relationships between livestock grazing and R. luteiventris habitat, we assessed characteristics of the species’ oviposition sites in 25 fishless ponds in northeastern Oregon. Oviposition sites were generally in shallow water (25 cm) close to shore and tended to be in the northeastern portion of ponds. Oviposition sites were found more frequently over heavily vegetated substrates and in areas of less substrate slope and shade than random points in littoral zones. We did not quantify temperature differences within ponds but the patterns we documented are consistent with preferential use of warmer microhabitats for oviposition.

We compared behavioral responses of three Pacific Northwest anuran larvae from different hydroperiods to water born cues of native and introduced predators. Two native anurans (Pacific treefrog, Pseudacris regilla and northern red-legged frog, Rana aurora aurora) and introduced bullfrogs (Rana catesbeiana) responded to water conditioned by native redside shiners (Richardsonius balteatus) by increasing refuge use. The two native anuran larvae differed in their response to introduced predator cues. Rana a. aurora, which occur in temporary and permanent waters, responded to both introduced bluegill sunfish (Lepomis macrochirus) and introduced crayfish (Procambarus clarkii). Pseudacris regilla, which occur primarily in temporary ponds, did not respond to water born cues from either introduced predator. The broader responses of R. a. aurora may indicate greater behavioral plasticity or more exposure to novel predators than experienced by P. regilla. Larvae of introduced R. catesbeiana responded strongly to cues from two fish native to the Pacific northwest, but did not alter behavior in response to any of five potential predators with which they co-occur in their native range. Fish that occur with R. catesbeiana in their native range generally find bullfrog tadpoles unpalatable. This pattern suggests that bullfrog larvae can recognize cues of novel predators that may find them palatable, which could contribute to their success as an invasive species in the region.

The distribution of the Oregon Spotted Frog (Rana pretiosa) has shrunk markedly and more than 2/3 of known populations are located along the Cascade Range in central Oregon. Despite the conservation concern, little is known about how habitat attributes and stressors such as invasive species influence R. pretiosa populations. We used egg mass counts to study R. pretiosa habitat relationships at oviposition sites and breeding ponds. Oviposition sites were in shallow water above gradually sloping substrates that supported moderate or dense herbaceous vegetation. Sixty-one per cent of occupied breeding ponds had fewer than 20 egg masses. We found strong support for two predictors of egg mass count: positive effect of other R. pretiosa breeding sites nearby and a negative effect of non-native fish having access to preferred R. pretiosa overwintering habitat. We found moderate support for effects of emergent and submergent vegetation coverage (positive) and of ponds being located in the Klamath Basin (negative). Maintaining and restoring overwintering habitats that are free of non-native game fish is likely to benefit R. pretiosa. Further work on movement ecology is needed to improve our understanding of habitat connectivity and the effects of site isolation on the persistence of R. pretiosa in Oregon.