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Many standardized techniques are used to monitor terrestrial salamanders, but fewer protocols have been tested for inventorying stream-dwelling salamanders, especially larvae. One new method uses artificial refugia (leaf litterbags) placed in shallow streams. To test the utility of litterbags, we sampled three transects of 6 litterbags each (2 large, 2 medium, and 2 small) placed in five small, medium, and large streams in Great Smoky Mountains National Park, an area of high aquatic salamander diversity. We captured 690 larval, juvenile, and adult stream-dwelling salamanders of 11 different species from June to November 2000 in the 90 litterbags. Large and medium-sized litterbags were most effective at sampling salamanders in small streams, but all bag sizes worked equally well in medium and large streams. The number of salamanders captured varied seasonally, with most captures in June and July. The depth of bag submergence significantly influenced litterbag use by adult and larval salamanders, but had no effect on juvenile salamanders. Although the technique was effective for determining the presence of many salamander larvae, variation in the numbers of individuals captured and the inability to relate captures to overall abundance make it impossible to monitor trends without considerable additional effort. The ease of deployment and non-destructive methodology suggest that litterbags could be useful in determining salamander presence during inventory programs, especially when the time to sample a large number of sites is limited.

Ph.D. dissertation on amphibians as indicator species for Everglades restoration success and park management.

Surveys of vocalizations are a widely used method for monitoring anurans, but it can be difficult to coordinate standardized data collection across a large geographic area. Digital automated recording systems (ARS) offer a low-cost method for obtaining samples of anuran vocalizations, but the number of recordings can easily overwhelm human listeners. We tested Song Scope, an automatic vocalization recognition software program for personal computers to determine if this type of machine learning approach is currently a viable solution for anuran monitoring. For three species, Song Scope scanned more than 200 h of recordings in 3-20 h at the settings we chose. The software misidentified true calls (false positive) at rates of 2.7%-15.8% per species and failed to detect calls (false negative) in 45%-51% of recordings. There exists a tradeoff between false positive and false negative errors, which can be adjusted by setting the minimum criteria for the recognition software. Users of this approach should carefully consider their reasons for monitoring and how they intend to use the data before creating a large monitoring network.

Describes a method for automating wildlife data collection and entry by using PDAs in the field

Some studies have described a negative effect of toe clipping on return rates of marked anurans, but the return rate is limited in that it does not account for heterogeneity of capture probabilities. We used open population mark-recapture models to estimate both apparent survival (0) and the recapture probability (p) of two treefrog species individually marked by clipping 2-4 toes. We used information-theoretic model selection to examine the effect of toe clipping on survival while accounting for variation in capture probability. The model selection results indicate strong support for an effect of toe clipping on survival of Green Treefrogs (Hyla cinerea) and only limited support for an effect of toe clipping on capture probability. We estimate there was a mean absolute decrease in survival of 5.02% and 11.16% for Green Treefrogs with three and four toes removed, respectively, compared to individuals with just two toes removed. Results for Squirrel Treefrogs (Hyla squirella) indicate little support for an effect of toe clipping on survival but may indicate some support for a negative effect on capture probability. We believe that the return rate alone should not be used to examine survival of marked animals because constant capture probability must be assumed, and our examples demonstrate how capture probability may vary over time and among groups. Mark-recapture models provide a method for estimating the effect of toe clipping on anuran survival in situations where unique marks are applied.

Models currently used to estimate patterns of species co-occurrence while accounting for errors in detection of species can be difficult to fit when the effects of covariates on species occurrence probabilities are included. The source of the estimation problems is the particular parameterization used to specify species co-occurrence probability. We develop a new parameterization for estimating patterns of co-occurrence of interacting species that allows the effects of covariates to be specified quite naturally without estimation problems. In our model, the occurrence of one species is assumed to depend on the occurrence of another, but the occurrence of the second species is not assumed to depend on the presence of the first species. This pattern of co-occurrence, wherein one species is dominant and the other is subordinate, can be produced by several types of ecological interactions (predator–prey, parasitism, and so on). A simulation study demonstrated that estimates of species occurrence probabilities were unbiased in samples of 50–100 locations and three surveys per location, provided species are easily detected (probability of detection  0.5). Higher sample sizes (.200 locations) are needed to achieve unbiasedness when species are more difficult to detect. An analysis of data from treefrog surveys in southern Florida indicated that the occurrence of Cuban treefrogs, an invasive predator species, was highest near the point of its introduction and declined with distance from that location. Sites occupied by Cuban treefrogs were 9.0 times less likely to contain green treefrogs and 15.7 times less likely to contain squirrel treefrogs compared to sites without Cuban treefrogs. The detection probabilities of native treefrog species did not depend on the presence of Cuban treefrogs, suggesting that the native treefrog species are naive to the introduced species.

Documents the discovery of the Puerto Rican Coqui on St. John, USVI near Virgin Islands National Park

Documents the discovery of breeding populations of Cuban treefrogs on St. John, USVI in Virgin Islands National Park

Batrachochytrium dendrobatidis (Bd) is a chytrid fungus, which has been associated with numerous amphibian mortality events around the world. It is hypothesized that Bd was inadvertently spread through human activities. We have developed a basic risk assessment tool to better understand the potential risk of transferring Bd between water bodies through field activities, and to target disinfection strategies which reduce the risk of spreading Bd. The questions in the risk assessment focus on the likelihood of Bd being present at sites, the likelihood of transferring the pathogen from one site to another, and the impact of transferring the pathogen. Identified risk factors include the presence of amphibians in the visited areas, the presence of Bd in one or more of the sites and in the surrounding area, the number of visitors to the sites, direct contact with amphibians, and the sharing of equipment between sites. The risk assessment tool can be found on the Internet at: http://www.cefas.co.uk/4449.aspx.