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This data release contains information collected during surveys for chorus fogs (Pseudacris maculata), wood frogs (Lithobates sylvaticus) and tiger salamanders (Ambystoma mavortium) conducted in Rocky Mountain National Park (1986 – 2022) by the U.S. Geological Survey. Survey methods included visual encounter and aural surveys, and dip netting. Data collected between 1986 and 1994 focused on named water bodies in Rocky Mountain National Park. Data collected between 1995 and 1999 are from focal monitoring sites as well as sporadic surveys of other wetlands. Data collected between 2000-2002 represent repeated surveys conducted between 1986 and 1994 (e.g., park-wide surveys of named water bodies) and additional surveys of unnamed waterbodies. Data collected after 2002 were collected under an occupancy framework. Sites were identified within pre-defined catchments using the National Wetlands Inventory Database to locate potential amphibian breeding habitat (e.g., ponds, ephemeral wetlands). If appropriate sites were encountered in the field and were not indicated on National Wetland Inventory databases (https://www.fws.gov/program/national-wetlands-inventory/metadata), they were added as incidental sites. Waterbodies were visited and surveyed at least two times during the amphibian active season (May and mid-August). Water bodies were surveyed for all life stages of amphibians.

Data in this dataset were collected as a part of the Student Network for Amphibian Pathogen Surveilance (SNAPs) program throughout the United States by undergraduate students in biology or ecology courses as a part of their curriculum throughout 2022. This data was collected in the field by students and sent to the USGS National Wildlife Health Center (NWHC) for testing of two amphibian fungal pathogens, Batrachochytrium dendrobatidis (Bd) and Batrachochytrium salamandrivorans (Bs). The dataset includes both the field records of the individual amphibians tested and the results for individuals for Bd and Bsal

This data set is comprised of 3 files of information collected on amphibians and vernal pool habitats at Canaan Valley National Wildlife Refuge from 2004 - 2016.

Includes data used to estimate population demographic parameters for an exemplary high-elevation amphibian species, the federally endangered Shenandoah salamander (Plethodon shenandoah). These parameters were entered into a Markov projection model which we used to forecast the future population status of the Shenandoah salamander.

We conducted visual surveys for (Rhyacotriton cascadae at 65 sites in Oregon and Washington that were historically occupied by the species to evaluate it's status across it's range and determine whether the species merits listing under the Endangered Species Act. This dataset includes counts of all amphibians observed during each site survey, as well as habitat and water sampling covariates between 4 May and 12 October of 2022.

We used radio-telemetry to study late-season movement and habitat use by Oregon spotted frogs (Rana pretiosa) at Crane Prairie Reservoir in Oregon. This dataset includes individual frog location data and habitat use during each tracking event that occurred roughly weekly between September and late November of 2018.

Altered flow regimes can contribute to dissociation between life history strategies and environmental conditions, leading to reduced persistence reported for many wildlife populations inhabiting regulated rivers. The Oregon spotted frog Rana pretiosa is a threatened species occurring in floodplains, ponds, and wetlands in the Pacific Northwest with a core range in Oregon, USA. All life stages of R. pretiosa are reliant on aquatic habitats, and inundation patterns across the phenological timeline can have implications for population success. We conducted capture–mark–recapture (CMR) sampling of adult and subadult R. pretiosa at three sites along the Deschutes River downstream from two dams that regulate flows. We related the seasonal extent of inundated habitat at each site to monthly survival probabilities using a robust design CMR model. We also developed matrix projection models to simulate population dynamics into the future under current river flows. Monthly survival was strongly associated with the extent and variability of inundated habitat, suggesting some within-season fluctuations at higher water levels could be beneficial. Seasonal survival was lowest in the winter for all three sites, owing to limited water availability and the greater number of months within this season relative to other seasons. Population growth for the two river-connected sites was most strongly linked to adult survival, whereas population growth at the river-disconnected site was most strongly tied to survival in juvenile stages. This research identifies population effects of seasonally limited water and highlights conservation potential of enhancing survival of particularly influential life stages.

Data used in the manuscript presenting a novel spatially explicit modeling framework for narrowing the divide between these disciplines to advance understanding of the effects of landscape structure on metapopulation dynamics.

Data used in manuscript that examines several potential factors influencing disease dynamics in the boreal toad–disease system: geographic isolation of populations, amphibian community richness, elevational differences, and habitat permanence.

Data used in Bayesian formulation of an open population capture-recapture model with >30 years of data to examine intrinsic and extrinsic factors regulating two populations of adult boreal chorus frogs (Pseudacris maculata).

Data used in an assessment of the effects of snowpack, temperature and disease on demography in boreal toads in Wyoming.

comparison of handling times - PIT (passive integrated transponder) tagging versus photography for boreal toads in Wyoming and Colorado

We investigated the relative effects of NaCl and energy-related saline wastewaters on hatching success, survival, size and development, and behaviors of northern leopard frogs ([i]Rana pipiens[/i]) and boreal chorus frogs ([i]Pseudacris maculata[/i]). Eggs were exposed and responses were tracked through hatching for 24 days. Five datasets are included. (1) Includes hatching and survival data for leopard frog eggs and larvae. (2) Includes hatching and survival data for chorus frog eggs and larvae. (3) Includes behavioral responses of both species monitored daily from day 9–24. (4) Includes morphology measurements from larval leopard frogs taken at the end of the experiment on day 24. (5) Includes morphology measurements from larval leopard frogs taken at the end of the experiment on day 24.

We investigated the influence of salinity from energy-related saline wastewaters on CORT of three larval amphibians (Tiger salamanders, Leopard frogs, and Chorus frogs) in Montana and North Dakota where wastewater contamination is pervasive. We measured baseline and stress-induced CORT (pg/h) of amphibians exposed to a gradient of wastewaters using a novel, noninvasive technique. We also measured background corticosterone in site water in 2017 and 2018, and evaluated variance within and among wetlands in 2019. Three datasets are included. (1) Includes corticosterone and morphology measurements from larval amphibians taken in 2017 and 2018. (2) Includes background corticosterone measurements and attributes from sites in 2017–2019. (3) Includes background corticosterone measurements for 5 points along the perimeter of 6 sites in 2019 to evaluate variance within and among wetlands.

This data set is comprised of four files related to the counts of amphibian species in the National Capital Region of the United States. Data was obtained from surveys of both lentic (wetland) and lotic (stream) sites within national parks

Many coastal dune ecosystems have been degraded by non-native dune vegetation, but these systems might still provide valuable habitat for some taxa, including amphibians. Because restoration of degraded dune systems is occurring and likely to continue, we examined the occurrence of amphibians in drainages associated with a coastal dune ecosystem degraded by invasive plants (European Beachgrass, Ammophila arenaria, and Iceplant, Carpobrotus edulis). We found that occupancy of three amphibian species (California Red-legged Frog, Rana draytonii; sierran treefrog, Pseudacris sierra; and Rough-skinned Newt, Taricha granulosa) among 21 coastal dune drainages was high, with most coastal dune drainages occupied by all three species. Furthermore, reproduction of Sierran Treefrogs and California Red-legged Frogs was estimated to occur in approximately half and one-third of the drainages, respectively. The probability of occurrence of Rough-skinned Newts and pre-metamorphic life stages of both anurans decreased during the study, perhaps because of ongoing drought in California or precipitation-induced changes in phenology during the final year of the study. Maintaining structural cover and moist features during dune restoration will likely benefit native amphibian populations inhabiting coastal dune ecosystems.

Occupancy models provide a reliable method of estimating species distributions while accounting for imperfect detectability. The cost of accounting for false absences is that detection and nondetection surveys typically require repeated visits to a site or multiple-observer techniques. More efficient methods of collecting data to estimate detection probabilities would allow additional sites to be surveyed for the same amount of effort, which would support more precise estimation of covariate effects to improve inference about underlying ecological processes. Time-to-detection surveys allow the estimation of detection probability based on a single site visit by one observer, and therefore might be an efficient technique for herpetological occupancy studies. We evaluated the use of time-to-detection surveys to estimate the occupancy of pond-breeding amphibians at Point Reyes National Seashore, California, USA, including variables that affected detection rates and the probability of occurrence. We found that detection times were short enough, and occupancy was high enough, to reliably estimate the probability of occurrence of three pond-breeding amphibians at Point Reyes National Seashore, and that survey and site conditions had species-specific effects on detection rates. In particular, pond characteristics affected detection times of all commonly detected species. Probability of occurrence of Sierran Treefrogs (Hyliola sierra) and Rough-skinned Newts (Taricha granulosa) was negatively related to the detection of fish and pond area. Time-to-detection surveys can provide an efficient method for estimating detection probabilities and accounting for false absences in occupancy studies of reptiles and amphibians.

The Shasta salamander (Hydromantes shastae) has been petitioned for listing under the Endangered Species Act. The greatest threat to the species is likely habitat loss that will be caused by the increase in elevation of Shasta Lake that will occur with proposed increases in the height of Shasta Dam to increase water storage capacity and maintain cold water for Chinook salmon (Oncorhynchus tshawytscha). Another potential threat is the fungus Batrachochytrium salamandrivorans, which has not yet been detected in North America but is lethal to related salamanders (Hydromantes strinatii) in Europe (Martel et al. 2014). In addition to these threats, recent genetic evidence suggests that the species as originally petitioned consists of three distinct species: H. shastae, H. samweli, and H. wintu (Bingham et al. 2018). Herein, we treat the species complex as a single entity because of difficulty distinguishing among the different species in the field. Recent work has increased knowledge about the habitat types within which Shasta salamanders can be found to include volcanic rock outcrops and areas of mature forest with scattered rocks, but no outcrops (Nauman and Olson 2004). To our knowledge, however, surveys to date have not accounted for the possibility of false absences, though Nauman and Olson (2004) used reference sites to ensure that Shasta salamanders were available on the surface to be detected. Systematic surveys that quantify and account for detection probabilities are needed to distinguish between true and false absences and their results would contribute information about habitat suitability and the distribution of the species. This information is vital to estimate what portion of the species complex would be lost to inundation when the elevation of Shasta Lake is raised and to identify potential refugia or recipient sites for translocations.

These data represent occupancy surveys conducted in long-term monitoring sites in Yosemite National Park in 2018 for three anurans, the Yosemite Toad (Anaxyrus canorus), the Sierran Treefrog (Pseudacris sierra), and the Sierra Nevada Yellow-legged Frog (Rana sierrae). The data include independent double-observer surveys and time-to-detection data to calculate detection probabilities and account for false negatives, or the failure to detect a species at a site where it occurs.

These data include site- and survey-specific information for occupancy surveys of Dixie Valley Toads (Anaxyrus williamsi) collected in the Dixie Valley, Churchill County, Nevada, in May 2019. The data include both multiple surveys of the same sites and time-to-detection information to quantify detection probabilities and account for imperfect detection in assessments of Dixie Valley Toad occupancy.