Search ARMI Database

Artificial pipe-like refugia have been used by researchers for more than 40 years in anuran studies, and captured 28 species, primarily (82%) hylid treefrogs. Early pipe-like refugia were made using cut pieces of bamboo in the tropical forests of Puerto Rico, but more recent studies have used synthetic pipes and have occurred primarily in the southeastern United States. Although some studies have addressed particular aspects of pipe design, the diverse characteristics of the refugia as well as their placement in the environment have varied greatly, making comparisons among studies difficult. Here, we summarize and evaluate information regarding pipe designs and placement, address potential concerns for researchers, and suggest studies necessary to better interpret the data gained from this technique in anuran studies.

In this paper we examine the biodemography of wild populations of three species (a turtle, a frog, and a snake). All are ectotherms, an understudied subset of the vertebrate taxa for understanding aging. Employing a comparative perspective by examining wild populations of relatively long-lived ectothermic vertebrates, we found that (1) across all three species, there was strong evidence for mortality senescence and (2) environmental factors, including stress, influence age-specific patterns of mortality both in current and later years and therefore produces plastic variation in the shapes of mortality trajectories.

Quantitative evaluations of reintroductions are infrequent and assessments of milestones reached before a project is completed, or abandoned due to lack of funding, are rare. However, such assessments, which are promoted in adaptive management frameworks, are critical. Quantification can provide defensible estimates of biological success, such as the number of survivors from a released cohort, with associated cost per animal. It is unlikely that the global issues of endangered wildlife and population declines will abate, therefore, assurance colonies and reintroductions are likely to become more common. If such endeavors are to be successful biologically or achieve adequate funding, implementation must be more rigorous and accountable. We use a novel application of a multistate, robust design capture-recapture model to estimate survival of reintroduced tadpoles through metamorphosis (i.e., the number of individuals emerging from the pond) and thereby provide a quantitative measure of effort and success for an “in progress” reintroduction of toads. Our data also suggest that tadpoles released at later developmental stages have an increased probability of survival and that eggs laid in the wild hatched at higher rates than eggs laid by captive toads. We illustrate how an interim assessment can identify problems, highlight successes, and provide information for use in adjusting the effort or implementing a Decision-Theoretic adaptive management strategy.

Welcome to the 2013 Annual ARMI Update, which provides highlights and significant milestones of this innovative program. This was an especially notable year for ARMI with the release of a landmark publication “Trends in amphibian occupancy in the United States.” Our synthesis and scaling up of 9 years of monitoring data produced the first-ever estimate of how fast frogs, toads and salamanders in the United States are disappearing from their habitats. Our findings received international attention and rekindled the discussion about global amphibian declines. This was not the only topic we addressed this year, as ARMI’s total publication count rose to 460 papers representing our latest research findings on the effects of climate change, land use, diseases, pesticides, and management on amphibian populations.

Full text: https://armi.usgs.gov/docs/ARMI%202013%20Annual%20Update.pdf

Demographic declines and increased isolation of peripheral populations of the threatened California red-legged frog(Rana draytonii)have led to the formation of internal range boundaries at opposite ends of the species’ distribution. While the population genetics of the southern internal boundary has been studied in some detail, similar information is lacking for the northern part of the range. In this study, we used microsatellite and mtDNA data to examine the genetic structuring and diversity of some of the last remaining R. draytonii populations in the northern Sierra Nevada, which collectively form the northern external range boundary. We compared these data to coastal populations in the San Francisco Bay Area, where the species is notably more abundant and still exists throughout much of its historic range. We show that ‘external’ Sierra Nevada populations have lower genetic diversity and are more differentiated from one another than their ‘internal’ Bay Area counterparts. This same pattern was mirrored across the distribution in California, where Sierra Nevada and Bay Area populations had lower allelic variability compared to those previously studied in coastal southern California. This genetic signature of northward range expansion was mirrored in the phylogeography of mtDNA haplotypes; northern Sierra Nevada haplotypes showed greater similarity to haplotypes from the south Coast Ranges than to the more geographically proximate populations in the Bay Area. These data cast new light on the geographic origins of Sierra Nevada R. draytonii populations and highlight the importance of distinguishing the genetic effects of contemporary demographic declines from underlying signatures of historic range expansion when addressing the most immediate threats to population persistence. Because there is no evidence of contemporary gene flow between any of the Sierra Nevada R. draytonii populations, we suggest that management activities should focus on maintaining and creating additional ponds to support breeding within typical dispersal distances of occupied habitat.

In the face of the sixth great extinction crisis, it is imperative to establish effective breeding protocols for amphibian conservation breeding programs. Efforts should not proceed by trial and error, nor should they jump prematurely to assisted reproduction techniques, which can be invasive, difficult, costly, and, at times, counterproductive. Instead, conservation practitioners should first look to nature for guidance, and replicate key conditions found in nature in the captive environment, according to the ecological and behavioral requirements of the species. We tested the effect of a natural hibernation regime on reproductive behaviors and health in the critically endangered mountain yellow-legged frog (Rana muscosa). Hibernation had a clear effect on reproductive behavior, manifesting in vocal advertisement signaling, female receptivity, amplexus, and oviposition. These behaviors are critical components of courtship that lead to successful reproduction. Our main finding was that R. muscosa requires a hibernation period for successful reproduction as only hibernated females produced eggs and only hibernated males successfully fertilized eggs. Although hibernation also negatively impacted body condition, it did so without any evident declines in frog health. This dependency on hibernation is not surprising since it is a major component of the conditions that R. muscosa experiences in the wild. Similar approaches to test hypotheses based on mimicking natural ecological conditions should be used in other amphibian conservation breeding programs to ensure that captive assurance colonies can play their role as genetic reservoirs for assurance and reintroduction.

A fundamental goal of wetland restoration is to reinstate pre-disturbance hydrological conditions to degraded landscapes, facilitating recolonization by native species and the production of resilient, functional ecosystems. To evaluate restoration success, baseline conditions need to be determined and a reference target needs to be established that will serve as an ecological blueprint in the restoration process. During the summer wet seasons of 2010 and 2011, we used automated recording units to monitor a community of calling anuran amphibians in the Picayune Strand State Forest of southwest Florida, USA. This area is undergoing hydrological restoration as part of the Comprehensive Everglades Restoration Plan (CERP). We compared occurrence of anurans at sites in the restoration area, to nearby sites in relatively undisturbed habitat. We assessed the utility of the latter as restoration targets, using a hierarchical model of community species occupancy to estimate the probability of occurrence of anurans in restoration and reference locations. We detected 14 species, 13 of which were significantly more likely to occur in reference areas. All 14 species were estimated by our model to occur at these sites but, across both years, only 8–13 species were estimated to occur at restoration sites. The composition and structure of these habitats within and adjacent to the Picayune Strand State Forest indicate that they are suitable targets for habitat restoration, as measured by amphibian occurrence and species richness. These areas are important sources for recolonization of anuran amphibians as the hydrologically degraded Picayune Strand undergoes restoration to mitigate the effects of overdrainage and habitat loss.

Environmental stochasticity can have profound effects on the dynamics and viability of wild populations, and habitat heterogeneity provides one mechanism by which populations may be buffered against the negative effects of environmental fluctuations. Heterogeneity in breeding pond hydroperiod across the landscape may allow amphibian populations to persist despite variable interannual precipitation. We examined recruitment dynamics over 10 yr in a high elevation Columbia spotted frog (Rana luteiventris) population that breeds in ponds with a variety of hydroperiods. We combined these data with matrix population models to quantify the consequences of heterogeneity in pond hydroperiod on net recruitment (i.e. number of metamorphs produced) and population growth rates. We compared our heterogeneous system to hypothetical homogeneous environments with (1) only ephemeral ponds, (2) only semi-permanent ponds, and (3) only permanent ponds. We also examined the effect of breeding pond habitat loss on population growth rates. Most eggs were laid in permanent ponds each year, but survival to metamorphosis was highest in the semi-permanent ponds. Recruitment success varied by both year and pond type. Net recruitment and stochastic population growth rate were highest under a scenario with homogeneous semi-permanent ponds, but variability in recruitment was lowest in the scenario with the observed heterogeneity in hydroperiods. Loss of pond habitat decreased population growth rate, with greater decreases associated with loss of permanent and semi-permanent habitat. The presence of a diversity of pond hydroperiods on the landscape will influence population dynamics, including reducing variability in recruitment in an uncertain climatic future.

The study of population dynamics requires unbiased, precise estimates of
abundance and vital rates that account for the demographic structure inherent in all wildlife
and plant populations. Traditionally, these estimates have only been available through
approaches that rely on intensive capture–recapture data. We extended recently developed Nmixture
models to demonstrate how demographic parameters and abundance can be estimated
for structured populations using only stage-structured count data. Our modeling framework
can be used to make reliable inferences on abundance as well as recruitment, immigration,
stage-specific survival, and detection rates during sampling. We present a range of simulations
to illustrate the data requirements, including the number of years and locations necessary for
accurate and precise parameter estimates. We apply our modeling framework to a population
of northern dusky salamanders (Desmognathus fuscus) in the mid-Atlantic region (USA) and
find that the population is unexpectedly declining. Our approach represents a valuable
advance in the estimation of population dynamics using multistate data from unmarked
individuals and should additionally be useful in the development of integrated models that
combine data from intensive (e.g., capture–recapture) and extensive (e.g., counts) data
sources.

Welcome to the 2012 ARMI Annual Update, which provides highlights and significant milestones of this innovative program. ARMI is uniquely qualified to provide research and monitoring results that are scalable from local to national levels and are useful to resource managers. ARMI has produced more than 420 peer-reviewed publications since its inception. Some of those publications are highlighted in this fact sheet. Please visit our website (http://armi.usgs.gov) for additional information on ARMI products, to find summaries of research topics, to search for ARMI activities in your area, or to obtain amphibian photographs. This year, we introduced a new feature on the ARMI website called “Trend Data” that provides occupancy and abundance estimates at the project level (http://armi.usgs.gov/projects/estimates_datasets.php). Data can be accessed in tabular format or plotted via an interactive map.

Full text: http://armi.usgs.gov/docs/ARMI%202012%20Annual%20Update.pdf

Welcome to the inaugural issue of ARMI’s Annual Update. This update provides highlights and significant milestones of this innovative program. ARMI is uniquely qualified to provide research and monitoring results that are scalable from local to national levels, and are useful to resource managers. ARMI has produced nearly 400 peer-reviewed publications, including 18 in 2011. Some of those publications are highlighted in this fact sheet. ARMI also has a new Website (http://armi.usgs.gov). You can now use it to explore an up-to-date list of ARMI products, to find summaries of research topics, to search for ARMI activities in your area, and to obtain amphibian photographs. ARMI’s annual meeting was organized by Walt Sadinski, Upper Midwest Environmental Science Center, and held in St Louis, Missouri. We met with local scientists and managers in herpetology and were given a tour of the herpetology collection at the St. Louis Zoo.

Full text: http://armi.usgs.gov/docs/ARMI%202011%20Annual%20Update.pdf (PDF*)

Wetlands in the remote mountains of the American West are the site of two massive ecological “experiments” spanning the 20th Century. In a kind of biological carpet-bombing following World War II, fish and wildlife managers introduced millions of predatory trout into fishless mountain ponds and lakes across the Western United States. The new top predators, which now occupy 95% of large mountain lakes, have truncated the habitat distributions of native frogs, salamanders, and wetland invertebrates to smaller, more ephemeral ponds where fish do not survive. Now a second “experiment” –anthropogenic climate change – threatens to push from the opposite direction; eliminating many ephemeral habitats and shortening wetland hydroperiods. Caught between climate-induced habitat loss and predation from introduced fish, native mountain lake fauna of the American West – especially amphibians– are at risk of being squeezed out. Targeted fish removals, guided by models of wetlands change, provide new strategies for restoring resilience.

We measured amphibian habitat use to quantify the effectiveness of conservation practices implemented under the Wetland Reserve Program (WRP), an initiative of the U.S. Department of Agriculture’s (USDA) Natural Resources Conservation Service (NRCS). From February to June 2007, we monitored quantified calling male anurans at sites that were in 1) cultivated cropland. cultivation; 2) formerly in agriculture cultivated cropland but but later restored through the WRP; and mature bottomland hardwood forest. Sites were, all located in two watersheds within the Mississippi Alluvial Valley of Arkansas and Louisiana, USA. We estimated estimated detection probability probabilities of detection and site occupancy within each land use category using a Bayesian hierarchical model of community species occurrence, and derived an estimate of species richness at each site. Relative to agricultural sites, nine of 1l species detected were significantly more likely to occur at WRP sites and six were more likely to occur at forested sites. Derived estimates of species richness were also higher for WRP and forested sites, compared to those in cultivated cropland. Almost half (45%) of the species responded positively to both WRP and forested sites, suggesting indicating that patches undergoing restoration may be an important transitional habitats. Thus, WRP conservation practices are successful in restoring suitable habitat and reducing the impact of cultivation-induced habitat loss on amphibians in the Mississippi Alluvial Valley.

Widespread amphibian declines and habitat fragmentation, coupled with advancements in tracking technology, have sparked increased emphasis on studying movements and the use of terrestrial habitats by amphibians. Peñalara Natural Park, Sierra de Guadarrama, Central Spain, provides habitat for a number of amphibians that use upland sites. In response to increased pressure on habitat in this region by tourism, we used 4 months of radio telemetry data for 17 adult Common Toads (Bufo bufo) to characterize the terrestrial movements, assess the factors influencing these movements, and determine the distribution and cover characteristics of summer refugia for these toads. We found that: a) movements were most pronounced following the breeding season in June and adults made movements of up to 470 m away from breeding sites, b) movements were not influenced by basin size, climatic variables or the sex the individual, c) the amount of terrestrial habitat used by toads ranged from 245 m2 to 2.5 ha, and d) within these areas toads most often used rock piles and juniper patches (Juniper communis nana) as cover during the summer. Our study emphasizes the importance of considering terrestrial landscapes when developing conservation strategies, and we suggest that a buffer of minimal development extending 550 m from the shoreline of each natal pond be considered when conservation plans are developed for Common Toad habitat in Peñalara.

We studied the microhabitat characteristics of 747 egg masses of the federallythreatened California Red-legged Frog (Rana draytonii) at eight sites in California. Our study showed that a broad range of aquatic habitats are utilized by ovipositing R. draytonii, including sites with perennial and ephemeral water sources, natural and constructed wetlands, lentic and lotic hydrology, and sites surrounded by protected lands and nested within modified urban areas. We recorded 45 different egg mass attachment types, although the use of only a few types was common at each site. These attachment types ranged from branches and roots of riparian trees, emergent and submergent wetland vegetation, flooded upland grassland/ruderal vegetation, and debris. Eggs were deposited in relatively shallow water (mean 39.7 cm) when compared to maximum site depths. We found that most frogs in artificial pond, natural creek, and artificial channel habitats deposited egg masses within one meter of the shore, while egg masses in a seasonal marsh averaged 27.3 m from the shore due to extensive emergent vegetation. Rana draytonii appeared to delay breeding in lotic habitats and in more inland sites compared to lentic habitats and coastal sites. Eggs occurred as early as mid-December at a coastal artificial pond and as late as mid-April in an inland natural creek. We speculate that this delay in breeding may represent a method of avoiding high-flow events and/or freezing temperatures. Understanding the factors related to the reproductive needs of this species can contribute to creating, managing, or preserving appropriate habitat, and promoting species recovery.

While conducting monitoring surveys on February 26, 2013 at the southernmost extant population in the USA, an adult male [Rana draytonii] was discovered dead, entangled in several native blackberry ([Rubus ursinus]) vines just below the surface of the water.

The development of an effective recovery plan for an endangered species requires knowledge of that species distribution and spatial arrangements within preferred habitat. Although the best available information of a species distribution is used to develop a plan, it is often lacking in regard to its actual geographical extent. The arroyo toad (Anaxyrus californicus) occurs in coastal drainages from Monterey County, California, south into northwestern Baja California, Mexico. Through field reconnaissance and the study of museum specimens, we determined that the four reported populations of the arroyo toad in the Sonoran Desert region of Riverside, San Diego, and Imperial counties, California are in error. Two additional sites in the Sonoran Desert are discussed regarding the possibility that the species occurs there. We recommend the continued study of arroyo toad populations in order to establish a better understanding of their distribution and the boundaries of their geographical range.

Genetic diversity within species provides the raw material for adaptation and evolution. Just as regions of high species diversity are conservation targets, identifying regions containing high genetic diversity and divergence within and among populations may be important to protect future evolutionary potential. When multiple co-distributed species show spatial overlap in high genetic diversity and divergence, these regions can be considered evolutionary hotspots. We mapped spatial population genetic structure for 17 animal species across the Mojave Desert, USA. We analyzed these in concurrence and located 10 regions of high genetic diversity, divergence or both among species. These were mainly concentrated along the western and southern boundaries where ecotones between mountain, grassland and desert habitat are prevalent, and along the Colorado River. We evaluated the extent to which these hotspots overlapped protected lands and utility-scale renewable energy development projects of the Bureau of Land Management. While 30–40% of the total hotspot area was categorized as protected, between 3–7% overlapped with proposed renewable energy project footprints, and up to 17% overlapped with project footprints combined with transmission corridors. Overlap of evolutionary hotspots with renewable energy development mainly occurred in 6 of the 10 identified hotspots. Resulting GIS-based maps can be incorporated into ongoing landscape planning efforts and highlight specific regions where further investigation of impacts to population persistence and genetic connectivity may be warranted.